kpjonsson

kpjmisc

R package, miscellaneous functions for work-related tasks

.dotfiles

Basic dotfiles setup for MacOS

.vim

Vim setup

misc-scripts

Helper scripts repository

bam-readcount

count DNA sequence reads in BAM files

bedtools2

A powerful toolset for genome arithmetic.

cbioportal

cBioPortal for Cancer Genomics

Conpair

Concordance and contamination estimator for tumor–normal pairs

coursera-data-science

coursera-datascitoolbox

Repo for course material for the Coursera course [2014].

coursera-getting-and-cleaning-data

Repo for for the Coursera course [2014].

coursera-interactive-python-programming

Repo for Coursera course "An Introduction to Interactive Programming in Python" [2014]

coursera-practical-machine-learning

Repo for course material for the Coursera course [2014].

dotfiles

My dotfiles, with simple install script.

ExData_Plotting1

Plotting Assignment 1 for Exploratory Data Analysis

facets-suite

helper R scripts that do many useful functions utilizing the facets CRAN package and its output

FACETS.app

Wrapper around counting and facets R code

furrr

Apply Mapping Functions in Parallel using Futures

ggrastr

Raster geoms for ggplot2

html-resume

Bare bones CSS-styled résumé

islr

Jekyll

Build a Jekyll blog in minutes, without touching the command line.

kpjonsson.github.io

Page made with the Hyde theme for Jekyll.

lubridate

Make working with dates in R just that little bit easier

maftools

:cancer: Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

ThinkStats2

Text and supporting code for Think Stats, 2nd Edition