kousu / data-multi-subject-test

Multi-subject data for the Spine Generic project

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Spine Generic Public Database (Multi-Subject)

DOI BIDS Validator

About this dataset

This dataset was acquired using the spine-generic protocol on multiple subjects, multiple sites and multiple MRI vendors and models. The list of subjects is available in participants.tsv.

This dataset follows the BIDS convention. The contributors have the necessary ethics & permissions to share the data publicly.

The dataset does not include any identifiable personal health information, including names, zip codes, dates of birth, facial features on structural scans.

The entire dataset is about 10GB.

Download

We are using a tool to manage large datasets called git-annex. To download this dataset, you need to have git installed, and also install git-annex

⚠️ Make sure you have at least version 8 by running:

git annex version | head -n 1
# the answer should show something like: git-annex version: 8.20200330

Then this will download the dataset:

git clone https://github.com/spine-generic/data-multi-subject && \
cd data-multi-subject && \
git annex init && \
git annex get .

You may substitute git annex get with more specific commands if you are only interested in certain subjects. For example:

git annex get sub-nwu01/ sub-nwu03/ sub-nwu04/ sub-oxfordFmrib04/ sub-tokyoSkyra*/

If you with to update an already-cloned repository, run:

git pull && git annex get .

See more at the official documentation and take note of our in-lab troubleshooting.

Analysis

The instructions to process this dataset are available in the spine-generic documentation.

Contributing

If you wish to contribute to this dataset please see the wiki. Thank you for your contribution 🎉

About

Multi-subject data for the Spine Generic project

License:Creative Commons Attribution 4.0 International


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