korsunskylab

rcna

R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)

spatula

Set of useful functions for handling spatial genomics data

cygnus

nsclc_manuscript_2023

Code used in the analysis of "Human lung cancer harbors spatially-organized stem-immunity hubs associated with response to immunotherapy" Chen et al Nature Immunology 2024

presto

❗ This is a read-only mirror of the original presto R package repository housed at github.com/immunogenomics/presto

baysorrr

R wrapper to Julia Baysor package, optimized for running on large datasets

BestPractices

This is a collection of notebooks, tutorials, and notes on best practices within the lab for single cell and spatial genomics analysis.

harmony

❗ This is a read-only mirror of the original harmony R package repository housed at github.com/immunogenomics/harmony

labdocs

Documents relevant to lab functions

lisi

❗ This is a read-only mirror of the original lisi R package repository housed at github.com/immunogenomics/lisi

symphony

❗ This is a read-only branch of the original symphony R package repository housed at github.com/immunogenomics/symphony

SynovialImageProcessing