konstin

stk-wiki-theme

A modern and responsive skin for the SuperTuxKart Wiki

capybara

A framework for generating bindings from Rust to python, helix and javascript

complex-manylinux-maturin-docker

allennlp

An open-source NLP research library, built on PyTorch.

alphafold

Open source code for AlphaFold.

bio_embeddings

Get protein embeddings from protein sequences

CPCProt

deepblast

Neural Networks for Protein Sequence Alignment

elasticsearch-dsl-py

High level Python client for Elasticsearch

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

faiss_prebuilt

Prebuilt .whl files for MacOS + Linux of the Facebook FAISS library

google-colab-template

helix

Native Ruby extensions without fear

hh-suite

Remote protein homology detection suite.

indoc

Indented document literals for Rust

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

jax-unirep

Reimplementation of the UniRep protein featurization model.

kubernetes-deployment

meine-stadt-transparent-customization

orjson

Fast, correct Python JSON library

PLUS

Protein sequence representations Learned Using Structural information (https://arxiv.org/abs/1912.05625)

protein-sequence-embedding-iclr2019

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

provis

Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."

pyo3

Rust bindings for the Python interpreter

randomos

SeqVec

Modelling the Language of Life - Deep Learning Protein Sequences

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

tox-1344

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.

wasm-bindgen

Interoperating JS and Rust code