konstantint / pyliftover

Pure-python implementation of UCSC liftOver genome coordinate conversion

konstantint/pyliftover Issues

different hg19 positions map to the same hg38 position
Closed a year ago2
Missing Output for Some Positions
Closed 2 years ago2
PAR1 and PAR2 liftover from hg19 to hg38?
Updated 2 years ago1
Interesting mapping and re-mapping results. Expert opinion please???
Closed 3 years ago1
Difference from binary liftOver
Closed 4 years ago
weird liftover
Closed 5 years ago
Problem converting hg38 to hg19
Closed 5 years ago2
coordinate 2bp shift for some and not for others
Closed 5 years ago7
problem with loading canFam3ToHg38.over.chain
Updated 5 years ago6
Deprecation warning - urlopen
Closed 5 years ago1
Conversion results may differ from what is obtained with LiftOver
Closed 5 years ago1
empty return for hg19 to hg38
Closed 6 years ago1
convert_coordinate fails with zero-based indices (but unity-based works)
Closed 7 years ago4
Incorrect liftover from hg38 to scaffold in hg19
Closed 8 years ago5
pyliftover won't map some locations on chr1 from hg38 to hg19
Closed 8 years ago1
Some incorrect conversions from hg38 to hg19 even on '+' strand
Closed 8 years ago1