Konstantinos Kyriakidis's repositories
precisionFDAsubmission
GENeTres Submission scripts used in the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions
batchtoolscc
Extension Package for Batchtools. Fine-Tuned for Compute Canada HPC Systems
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bcbioSmallRna
R package to analyze data after small RNAseq with bcbio
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
GFAse
Tool for globally phasing diploid assembly graphs with orthogonal data
GSOC2020_RNASeq
Selection test for the project named: "Creating a new pipeline for long-read RNA-seq using StringTie v2"
pbRUGD-workflow
Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
pfb2023
Programming for Biology @ CSHL 2023