Kohl Kinning's repositories
demo-github-as-team
Demo of working on Github as a team
kohlkopf.github.io
Personal website displaying resume, projects, and blog posts.
lewis_and_clark_mini_workshop
Short workshop on UNIX usage and single-cell analysis with Lewis & Clark College undergraduates as the audience
rstudio_singularity_slurm
Run Rstudio server on remote host with SLURM using a SOCKS5 tunnel.
signac
Hashtag-based population analysis with twitter data using genomics techniques
univ_oregon_mini_workshop
Short workshop on SSH tunneling and single-cell analysis with 2018 BGMP cohort as the audience
gatk
Official code repository for GATK versions 4 and up
GenomicsTechniques
2017 UO BGMP Cohort, Genomics Techniques Lab Notebook documents
guide-to-working-as-team-on-github
A quick guide to working as a team on Github
GUS-LD
Genotyping Uncertainty with Sequencing data - Linkage Disequilibrium
hvac_viral_metagenomics
Exploration of metagenomic data from virus particles dislodged from HVAC filters located in double-occupancy university dormitory rooms (Rosario, 2018).
imagej_macros
Collection of useful ImageJ macros, probably .ijm format
motif-mark
Plot protein binding motifs on an image of the axon and flanking introns with Python
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
reads-for-assembly
Simulate metagenomic short reads from one or more populations.
scrublet
Detect doublets in single-cell RNA-seq data
seurat
R toolkit for single cell genomics
sound_processing
Sound processing in R using the package tuneR
sparklingwater
Sparkling Water for R
STAR_batch_alignment
Script for batch alignment using STAR for use after the index is generated from the genome.
UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
wholebrain
R package for segmentation, registration and generating web-based brain atlases from microscope images