knokknok's repositories
AnnotationForge
Tools for building SQLite-based annotation data packages
Language:R000
better-defaults
A small number of better defaults for Emacs
Language:Emacs Lisp000
config
My configuration files.
Language:Shell000
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
Language:PythonMIT000
dplyr
Plyr specialised for data frames: faster & with remote datastores
Language:RNOASSERTION000
ggrepel
:round_pushpin: Repel overlapping text labels away from each other.
Language:R000
knitr
A general-purpose tool for dynamic report generation in R
Language:R000
mgsa-bioc
Mirror of the mgsa Bioconductor package (https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mgsa) with full history
Language:R000
pheatmap
Pretty heatmaps
Language:R000
RSQLite
R interface for SQLite
Language:C000
salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
Language:C++GPL-3.0000
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Language:Python000
STAR
RNA-seq aligner
MIT000