knights-lab / DOJO

DOJO (Database of Justified Ontologies)

Designed to house in silico and in vitro communities for benchmarking functional and taxonomic classification tasks.

All taxonomic communities will be evaluated against the NCBI taxonomy at these levels if possible:

1. superkingdom (k__)
2. phylum (p__)
3. class (c__)
4. order (o__)
5. family (f__)
6. genus (g__)
7. species (s__)
8. strain (t__)

The NCBI taxonominy ID (TID) for Homo Sapien is:

9606

With its formatted string:

k__Eukaryota;p__Chordata;c__Mammalia;o__Primates;f__Hominidae;g__Homo;s__Homo_sapiens;t__

Installation

# DOJO
pip install git+https://github.com/knights-lab/DOJO.git --no-cache-dir --upgrade