kmuench's repositories
16p_resource
Code used to perform analyses and generate figures for Roth, Muench et. al.
cellforest
A highly interactive single-cell bioinformatics workflow management library. Built with dataforest
cluster_seurat3_10x_ms
An updated version of the cluster_pooled_10x_ms pipeline
cv-o-matic
A tool to help automate generating new, customizable versions of CVs.
demux_cells_with_ML
Applying machine learning to demultiplex scRNA-Seq data and gain insights into developmental neurobiology
DESeqAid
Library of useful functions I like to use with my differential expression pipelines.
GEARS
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
kmuench.github.io
Based on a brazen two-column theme for Jekyll.