kmfisch

VAPr

VAPr: A Python package for NoSQL variant data storage, annotation and prioritization

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bjorn

C-VIEW

This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.

MPN_atlas_methods

Source code for methods for A Dynamic Pre-Leukemia Stem Cell Atlas of Myeloproliferative Neoplasm Evolution

Screw

SCREW: A Reproducible Workflow for Single-Cell Epigenomics

gsia

Gene Set Information Analysis

abyss-2.0-giab

:baby_bottle: Assemble the Genome in a Bottle sequencing data

cirrus-ngs

goatools

Python library to handle Gene Ontology (GO) terms

qiimp

Web application to collect metadata specifications from an experimenter and produce metadata input files with appropriate constraints

visJS2jupyter

visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells

mali-dual-crispr-pipeline

This repository contains code for the dual-CRISPR screen analysis pipeline developed to analyze results from the dual-CRISPR screening system set up by the labs of Dr. Prashant Mali and Dr. Trey Ideker. The software is developed by Amanda Birmingham and Roman Sasik of the Center for Computational Biology and Bioinformatics at the University of California, San Diego.

jupyter-pathway

Canonical pathway visualization and analysis

bioconda-recipes

Conda recipes for the bioconda channel.

OmicsPipe2.0

StarCluster-Plugins

GeneFreq

Shiny app for exploring distributions of genetic variants in cancer

PipeMaster

Employs the Omics Pipe framework for automated DNA/RNA-seq variant calling and copy number analysis.

bioinf-python

Python for Bioinformatics

omics_pipe_platypus

stormseq

STORMSeq: Scalable Tools for Open-source Read Mapping

bayesian_first_aid

Inside every classical test there is a Bayesian model trying to get out.

drmaa-python

Python wrapper around the C DRMAA library.