Kathleen Fisch's starred repositories
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
MPN_atlas_methods
Source code for methods for A Dynamic Pre-Leukemia Stem Cell Atlas of Myeloproliferative Neoplasm Evolution
abyss-2.0-giab
:baby_bottle: Assemble the Genome in a Bottle sequencing data
visJS2jupyter
visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells
mali-dual-crispr-pipeline
This repository contains code for the dual-CRISPR screen analysis pipeline developed to analyze results from the dual-CRISPR screening system set up by the labs of Dr. Prashant Mali and Dr. Trey Ideker. The software is developed by Amanda Birmingham and Roman Sasik of the Center for Computational Biology and Bioinformatics at the University of California, San Diego.
jupyter-pathway
Canonical pathway visualization and analysis
bioconda-recipes
Conda recipes for the bioconda channel.
PipeMaster
Employs the Omics Pipe framework for automated DNA/RNA-seq variant calling and copy number analysis.
bioinf-python
Python for Bioinformatics
bayesian_first_aid
Inside every classical test there is a Bayesian model trying to get out.
drmaa-python
Python wrapper around the C DRMAA library.