kmayerb

tcrdist3

flexible CDR based distance metrics

tcrdist2

Quantifiable predictive features define epitope-specific T cell receptor repertoires

hla3

weight of evidence of HLA allele expression based on bulk TCR beta-chain repertoires

nf-mixcr

Nextflow Pipeline For MiXCR (TCR Features From Bulk fastq files)

NIA34780B

tcrsampler

Sample TCRs according to VDJ gene usage frequency

estimate_radius

example of more intensive TCR radius estimation

zipdist

Keeping Numpy and Pandas attributes of python classes nice and tidy

10X_utils

Tools for Parsing 10X Standard Outputs

baserebase

cdr3art

concise visualization of T cell junctions

clonality

Metrics for Clonality in Python

clumptydumpty

coop-puzzles

debug-practicum

Practice Debugging in RStudio

flowplyr

Read and manipulate .fcs, .xml files associated with flow cytoplasms events for downstream analysis

HLAGuessr_EXP

i4TB_Jan_2022

Live Demo of tcrdist3

knead-docker

Dockerfile and nf-pipeline for trimming and removing human RNA

Meleagris

really basic turkey package

merge-conflicts

mRNA_vaccination_boosts_spike_specific_T_cell_memory

nf-to-python

Run any embarrassingly parallel Python routine on many files using NextFlow

postcards

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

stitchr

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

tcrdist3-ms

TCR meta-clonotypes with tcrdist3

tcrdist3_book_chapter

tenextra

extra tools for parsing 10X outputs

use_mixcr

vaccine_deg