kkwock / Stone

Stone Lab @ CSUEB Collaboration Projects focused on Plant Bioinformatics

Stone

Contents

Code

• ncbi-ann-glyma.R: Rscript with source functions
• ncbiGeneSumm.Rmd: R Notebook with raw code
• ncbiGeneSumm.html: HTML output of notebook. Preview
• ncbiGeneSumm.RData: Environmental Variables of pre-processed data.

Data

• data/Annotations/: CSV outputs of Gene annotations and GO enrichments
• data/Annotations/images: Images of GO-enrichments

How to use

1. Use ncbiGeneSumm.Rmd notebook in RStudios
2. Load in custom functions: source('ncbi-ann-glyma.R')
3. Load variables used in rendering outputs: load('ncbiGeneSumm.RData')