Kostas Kougioumoutzis's repositories
prioritizr
Systematic conservation prioritization in R
awesome-network-analysis
A curated list of awesome network analysis resources.
bayesLopod
Natural history museums and herbaria collectively hold hundreds of millions of zoological, botanical, and paleontological specimens. These collections serve as the foundation for understanding the distribution of life on Earth and the basis for addressing loss of biodiversity, emerging diseases, and other pressing global problems as well as important question in ecology and evolution. One of the short comings of these kind of data is that the lack of evidence of the presence of a species in a certain region does not mean the species is truly absent there. Likewise, specimens are often misidentified, and therefore the report of a species in a locality is not always evidence that a viable population occurs there. The goal of this project is to develop a method which could be used to estimate the probability of presence of a species in a certain study region based on certain sampling effort and presence reports.
ENMTools
ENMTools R Package
geoda
GeoDa: An introduction to spatial data analysis
GeoDist
Constrained distance calculation and associated geotools
ggnetwork
Geoms to plot networks with ggplot2
HerbariumLabel
Generates two models of labels for herbarium exsicates (5 and 6 sheets per page). Data input according to Darwin Core Terms. Includes duplicates.
IBDKimbe
Data and scripts for isolation by distance analyses, Pinsky et al. 2017 Current Biology
MapSuite
An R package for making layered maps over time or other dimensions.
master-the-tidyverse
Course contents for Master the Tidyverse
mobsim
Spatial analysis of scale-dependent biodiversity changes
PaleoView
PaleoView is a visualization tool for paleoclimatic modeling data.
R-ecology-lesson
:notebook: Data Carpentry R lessons on ecology.
R-Functional-Diversity
Analysis of Functional Diversity
R-spatial-raster-vector-lesson
Data Carpentry spatial lessons - raster/vector data in R
Rmarkdown_tips
Rmarkdown conditional chunks to create multilingual pdf and html with images
spatial_ecology_cheatsheet
This is a rather random assortment of references on issues of geometry, fractals, aggregation and scaling in ecology.
sPlot_Phylogeny
Workflow to generate the phylogenetic tree for the taxa in the global vegetation plot database sPlot
supersmart
Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa
template
A template for research projects structured as R packages
umbrella
Utilites for evaulating the effectiveness of conservation reserves, specifically those created for umbrella species.
Using_biodiversity_data_for_biogeography
Information, scripts, exercises and example data for the Workshop 'Using biodiversity data in biogeography'. Please scroll down for more information.
version-control-hot-mess
This is the repo where we store data and code for the git / documentation training.