kkdey

tmcmcR

A Rcpp package for fitting RWMH, TMCMC, adaptive RWMH/TMCMC, MC3 and TMC3 chains.

metagenomics

This is an application of some statistical methods for clustering of samples based on OTU abundance and also some novel differential analysis.

deeptpx-ghpages

Deep topic model for clustering RNA-seq expression data

GTExV6Brain

Bulk-RNA data across brain samples GTEx V6 project

ordtpx

An R package for topic model on ordered features

singlecellRNAseqData

Bioconductor data package for hosting single cell RNA-seq data

singleCellRNASeqMouseDeng2014

Deng et al 2014 data package

wave-sfa

This repository is aimed at applying wavelet transform for driving topic models and sparse factor analysis with ordered variables

ancient_dna_journal_club

Ancient DNA Analysis: Journal Club

ash_stan

A Git repo for ash using STAN

ashr

An R package for adaptive shrinkage

basic-stats

Basic stats lecture notes

benchmarking

Benchmarking experiments on FLASH and ASH

bookdown

Authoring Books with R Markdown

bookdown-demo

A minimal book example using bookdown

CountClust-1

flashtpx

Repository for fitting Topic Model using Factor Loading ash (FLash) due to Wei

GOTnames

Names of characters and word lengths in Game of Thrones

MTM-TMCMC

A repository for the paper on Multiple Try TMCMC approach

R-tutorial2016

A R and basic Stat tutorial

sequence_clustering

sfa_seq

Repository tracking applications of SFA model

singleCell-method

website

singleCellRNASeqHumanBlakeleyEmbryo

Blakeley et al 2015 RNA-seq data

singleCellRNASeqHumanLengESC

testpkg

tmcmcR2

A alternate package to check for tmcmcR

topotpx

R package for fitting topographical topic models

topotpx-ghpages

Gh-pages framework to track progress on topographic topic model work

varselectpx

A R package + gh-pages on variable selection in topic models