Kevin Chau's repositories
RNAseq_Pipeline
Snakemake pipeline optimized for usage on SLURM
AlignmentAlgorithms
Basic sequence alignment scripts
WeightedNetAnalysisTut
WGCNA Guided Tutorial
advent_of_code_2021
Advent of Code 2021 with Rust
bioinf_contest_2021
Bioinformatics Contest 2021 (https://bioinf.me/en/contest)
cnvkit
Copy number variant detection from targeted DNA sequencing
flask-apollo-react-hooks-docker-graphql
➰Flask-React-Hooks containerized in Docker w/Apollo-client-GraphQL && Graphene-GraphQL-server
GEE_Vis
Gene EnrichmEnt VISualizer
Genome-Annotation-Table
CSE 182 Final Project
HuffmanCompression
Huffman Compression written in C++
kallisto_smk
Snakemake pipeline for Kallisto RNA-Seq quantifications
Pangolin
Pangolin is a deep-learning method for predicting splice site strengths.
pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
pyright
Static type checker for Python
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
twtui
TUI for Seqera Platform
VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)