kiwenlau / rnatoy

A proof of concept RNA-Seq pipeline with Nextflow

RNA-Seq toy pipeline

A proof of concept of a RNA-Seq pipeline intended to show Nextflow scripting and reproducibility capabilities.

How execute it

1. Install Docker on your computer. Read more here https://docs.docker.com/

2. Install Nextflow (version 0.17.x or higher)

   curl -fsSL get.nextflow.io | bash

3. Pull the required Docker image as shown below

   docker pull nextflow/rnatoy:1.3

4. Launch the pipeline execution

   nextflow run nextflow-io/rnatoy -with-docker