KirstieJane

infrastructure-drop-ins

This repo contains information and the schedule for the Turing Infrastructure drop-in sessions.

community

This is the main CHAOSS community repository. Feel free to open an issue to discuss a topic of community interest! This repository also holds governance, mentorship, and other community-related documentation

research-application-management

professionalising-data-science-roles

Policy Skills Award project with TPS and Skills team - Professionalising traditional and infrastructure research roles in data science

open-research-community-management

Establishing cross-community collaborations and promoting open research in data science

ParticleDA.jl

scivision

scivision: a framework for scientific image analysis

team-compass

A repository for team interaction, syncing, and handling meeting notes across the JupyterHub ecosystem.

equadratures

Raphtory

Scalable graph analytics database powered by a multithreaded, vectorized temporal engine, written in Rust

OMRB20_hackathon-organisitation_os_events

See: https://github.com/OpenMRBenelux/openmrb2020-hackathon/issues/13

spin-test

This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in "On testing for spatial correspondence between maps of human brain structure and function," Alexander-Bloch et al., NeuroImage, 2018.

rotate_parcellation

Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.

binderhub

Run your code in the cloud, with technology so advanced, it feels like magic!

magnetar-propeller

Magnetar Propeller Model with Fallback Accretion

the-turing-way

Host repository for The Turing Way: a how to guide for reproducible data science

signatures-psychiatry

Code from the paper "A signature-based machine learning model for bipolar disorder and borderline personality disorder".

bids-specification

Brain Imaging Data Structure (BIDS) Specification

psych-DS

Welcome to Psych-DS! If this is your first time visiting a Github repository, look to the left/down to the README (below the repository files.) Psych-DS is a specification for behavioral datasets - JSON-LD metadata, predictable directory structure, and machine-readable specifications for tabular datasets in behavioral research

open-org-leaders-manual

Repository for The Open Organization Leaders Manual source code

predictiveViz

Interactive predictive model visualization

2018_projects

Directory of Neurohackademy 2018 projects

BIDSonym

a BIDS app for pseudo-anonymization of neuroimaging data

o-factor

A cursory estimate of code and data sharing across open-access scientific journals

atlasreader

Python interface for generating coordinate tables and region labels from statistical MRI images

pybids

Python tools for querying and manipulating BIDS datasets.

bidsQC

Scripts to batch convert dicoms to BIDS in parallel on an HPC environment, followed by a file check

NiBetaSeries

Nipype implementation of BetaSeries Correlations (Beta)

pypyls

A Python implementation of Partial Least Squares (PLS) decomposition

NSPN_WhitakerVertes_PNAS2016

Data and analysis code to reproduce the NSPN Manuscript "Adolescence is associated with genomically patterned consolidation of the hubs of the human brain connectome".