Kiran Franklin's repositories
molpro
MolPro is a comprehensive python package for small molecule generation using protein active site or/and similar molecules using 3D information of molecules with in-silico validation of molecules by docking , pharmacophore hypothesis. Also off target prediction based on the binding site similarities.
E2E_ML_project
This deals with EDA and building various ML models using sklearn: KNeighborsRegressor DecisionTreeRegressor RandomForestRegressor,AdaBoostRegressor LinearRegression, Ridge,Lasso, etc and HP using randomCV and deploy the same in localhost via flask
End-to-End-Random-forest-implementation
Its is an End-to-End Random forest implementation includes data preprocessing [ cleaning, feature selection and engineering],EDA, hyperparameter tuning, Model interpretation with uncertainty and prediction intervals and plotting the feature importance .
Exploring_QSAR_from_data_curation_to_SAR
Exploring QSAR: From Data Collection to Structure-Activity Relationship Analysis
ML_with_nextflow_poc
It is POC project, using Nextflow to run ML pipeline
Plant_disease_classifiction
PyQT based GUI to classify the plant disease classification. Model is trained on Kaggle data.
datasharing
The Leek group guide to data sharing
Mechanisms-of-Action-MoA-Prediction
Mechanisms of Action (MoA) Prediction
Nextflow_tutorials
Introduction to Bioinformatics workflows with Nextflow
Breast_cancer_survival_pred
Breast Cancer Survival Prediction
ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
MoleculeACE
A tool for evaluating the predictive performance on activity cliff compounds of machine learning models
Multi_output_regression
This repo is tutorial for exploring various algorithms for Multi-output prediction in ML and DL using a regressor data and understanding them how mathematically they work.
OpenCV_projects
OpenCV mini projects
resume
My resume
RNASEQ_Upstream_downstream
Simple RNA Seq upstream pipeline buidling using nextflow and downstream analysis using DESeq2
simple_RNAseq_pipeline_using_nextflow
Simple RNA-seq upstreaming Pipeline using Nextflow