Command not found

Question

Command not found

guthrey1 opened this issue 5 years ago · comments

I followed these instructions:

but when I reach the actual kipoi predict step it says command not found. I previously ran multiple kipoi predict jobs simultaneously on this enviornment and I am wondering why now this command cannot be found.

Žiga Avsec · Answer 1 · Fri Aug 16 2019 17:24:22 GMT+0800 (China Standard Time)

Can you run which kipoi, which gkmpredict and echo $PATH in the kipoi-lsgkm-SVM environment?

Note that if you run the first command (kipoi env create) you don't have to run the second one (kipoi env install).

guthrey1 · Answer 2 · Sat Aug 17 2019 01:16:39 GMT+0800 (China Standard Time)

Is kipoi in the wrong place?

Žiga Avsec · Answer 3 · Tue Aug 20 2019 03:47:43 GMT+0800 (China Standard Time)

Hm. Yes. Kipoi doesn't seem to be installed. Could you paste the exact commands you used to reach that environment? Try installing kipoi explicitly using pip install kipoi to the lsgkm-SVM environment and then run the same which commands in a new terminal (after running source activate kipoi lsgkm-SVM)

guthrey1 · Answer 4 · Tue Aug 20 2019 04:21:23 GMT+0800 (China Standard Time)

Thank you that worked Sent from Mail for Windows 10 From: Žiga Avsec Sent: Monday, August 19, 2019 3:47 PM To: kipoi/examples Cc: guthrey1; Author Subject: Re: [kipoi/examples] Command not found (#3) Hm. Yes. Kipoi doesn't seem to be installed. Could you paste the exact commands you used to reach that environment? As a fix you could try installing kipoi explicitly using pip install kipoi — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

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Žiga Avsec · Answer 5 · Wed Sep 04 2019 21:08:22 GMT+0800 (China Standard Time)

can we close this issue?