kimmo1019

DeepCDR

Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network

Roundtrip

Roundtrip: density estimation with deep generative neural networks

scDEC

Simultaneous deep generative modeling and clustering of single cell genomic data

Deopen

A hybrid deep convolutional neural network for predicting chromatin accessibility

hicGAN

Hi-C data super-resolution with generative adversarial networks

JAE

Single cell joint embedding and modality prediction with autoencoder

DeepCAGE

Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility

audioNet

A deep neural network for audio recognition with online prediction website

scDEC-Hi-C

Deep embedding clustering for single cell Hi-C data

LRCN

Chinese Image Captioning based on Long-term Recurrent Convolutional Networks

BE-ABC

An improved artificial bee colony algorithm for protein folding optimization

CoupleRTM

CoupleRTM: Co-embedding and couple clustering with Roundtrip model

EpiGePT

Geforme

neurips2021_multimodal_topmethods

ASTER

ASTER: accurately estimating the number of cell types in single-cell chromatin accessibility data

awesome-causality-algorithms

An index of algorithms for learning causality with data

CausalEGM

Deep Encoding Generative Modeling for Causal Inference

causalegm-feedstock

A conda-smithy repository for causalegm.

DeepCDR_LCQ

GTM

icme-generative-models-summer-2023

ICME Generative Models Summer Workshop 2023

kimmo1019.github.io

multiome

scDeepHiC

Deep clustering and embedding of sc-Hi-C data

scMul

scTrace

Time-course single-cell multimodal analysis and trajectory inference using deep generative models

scvelo

RNA Velocity generalized through dynamical modeling

spatialRT

spatialSAE

Deciphering spatial transcritomics data with structural deep autoencoder

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks