khyox

recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

draftGenomes

Script to collect sequence files from multiple NCBI WGS projects and process them (LEGACY SOFTWARE)

GR

Genome Research template for LaTeX

GAT-GO

mappgene

mappgene (Massively Parallel and Portable Genomic Sequence Analysis) runs SARS-CoV-2 sequencing on HPC platforms.

ratsvm

Robust Analysis of Time Series in Virome Metagenomics

bioconda-recipes

Conda recipes for the bioconda channel.

CDIL-CNN

centrifuge

Classifier for metagenomic sequences

cpython

The Python programming language

deep-protein-generation

EVcouplings

Evolutionary couplings from protein and RNA sequence alignments

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

ivar

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

JLD.jl

Saving and loading julia variables while preserving native types

LucaProt

LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structure information to predict protein function.

matplotlib

matplotlib: plotting with Python

optlang

optlang - sympy based mathematical programming language

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

perm-je

PERsistent heap Management library (LLNL-CASC)

ProfileView.jl

Visualization of Julia profiling data

pyenv-doctor

Verify pyenv installation

PyLaTeX

A Python library for creating LaTeX files

rcf-aux

Recentrifuge auxiliary stuff

RiBoSor

The RiBoSor: creates alternative reading frames within an existing gene

typeshed

Collection of library stubs for Python, with static types