Khurram Maqbool's repositories
Amethyst
Automatic tiling window manager for macOS à la xmonad.
BALSAMIC
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
battenberg
Battenberg R package for subclonal copynumber estimation
CNVpytor
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
cyvcf2
cython + htslib == fast VCF and BCF processing
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
dotfiles-1
A collection of my personal dotfiles
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
genome-spy
A GPU-accelerated toolkit and visualization grammar for genomic (and other) data
modern-unix
A collection of modern/faster/saner alternatives to common unix commands.
mongo
The MongoDB Database
msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
ohmyzsh
🙃 A delightful community-driven (with 2,000+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
powerline
Powerline is a statusline plugin for vim, and provides statuslines and prompts for several other applications, including zsh, bash, tmux, IPython, Awesome and Qtile.
PyVCF
A Variant Call Format reader for Python.
raredisease
Call and score variants from WGS/WES of rare disease patients.
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
scout
VCF visualization interface
SVDB
structural variant database software
the-book-of-secret-knowledge
A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.
tmux
tmux source code
tpm
Tmux Plugin Manager
vcfpy
Python 3 library with good support for both reading and writing VCF
Vundle.vim
Vundle, the plug-in manager for Vim
wttr.in
:partly_sunny: The right way to check the weather
YouCompleteMe
A code-completion engine for Vim
zsh-autosuggestions
Fish-like autosuggestions for zsh
zsh-history-substring-search
🐠 ZSH port of Fish history search (up arrow)
zsh-syntax-highlighting
Fish shell like syntax highlighting for Zsh.