Etienne Kornobis (khourhin)

khourhin

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Etienne Kornobis's repositories

awesome-emacs

A community driven list of useful Emacs packages, libraries and others.

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bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

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bioservices

Access to Biological Web Services from Python.

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damona

singularity environment manager (application to NGS and bioinformatics)

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demultiplex

Sequana demultiplexing pipeline

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denovo

Denovo Assembly from FASTQ files

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depletion

Deplete Fastq files from human or other content

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GNFish

Suite of Python programs for Gene extraction and Phylogentic Inference

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mapper

Pipeline to map a set of FastQ files

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mycotools

Library for Mycobacterium related bioinformatic tools

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nanomerge

Pipeline utility to perform merge of barcoded nanopore runs

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of_demultiplexing_and_fastqc

repository for JOSS paper about sequana_fastqc and sequana_demultiplex pipelines

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org-gcal.el

Org sync with Google Calendar. (active maintained project as of 2019-11-06)

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rnaseq

RNA-seq, QC and differential analysis pipeline

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samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

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sequana

Sequana: a set of Snakemake NGS pipelines

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sequana-wrappers

The Sequana Wrapper Repository is a collection of reusable wrappers used in Sequana Pipelines.

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sequana_pipetools

A set of tools to help building or using sequana pipelines

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snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

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