khoerol's starred repositories
ggpicrust2
Make Picrust2 Output Analysis and Visualization Easier
snakemake-workflow-qiime2
Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
16S-rDNA-V3-V4
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
taxonomizr
Parse NCBI taxonomy and accessions to find taxonomic assignments
NGSpeciesID
Reference-free clustering and consensus forming of long-read amplicon sequencing
KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
centrifuge
Classifier for metagenomic sequences
Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy