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khoerol's starred repositories

Code, unit tests, and tutorials for running PICRUSt2

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Make Picrust2 Output Analysis and Visualization Easier

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Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2

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16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

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Accurate sample inference from amplicon data with single nucleotide resolution

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Parse NCBI taxonomy and accessions to find taxonomic assignments

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Reference-free clustering and consensus forming of long-read amplicon sequencing

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fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads

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NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

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KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

Language:PythonGPL-3.030600

🌈 Interactive analysis of metagenomics data

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Classifier for metagenomic sequences

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Course Files for Complete Python 3 Bootcamp Course on Udemy

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