khigashi1987

scRNAseq_handson

PythonによるシングルセルRNA-seq解析。

Labeled-LDA

The C implementation of Labeled-LDA with collapsed gibbs sampling estimation.

SAUCIE_PyTorch

PyTorch Implementation of SAUCIE Algorithm

OnlineLDA_ParticleFilter

Topic prediction of new documents with pre-learned LDA model by Particle filter posterior estimation.

VB-GMM

Variational bayesian model selection for Gaussian mixture model

MVNImputer

Matrix imputation by EM algorithm

pyEDM_Maizuru

pyEDMを使った生態学時系列データの因果推定

Python_PCoA

The Python implementation for Principal Coordinate Analysis

CorrLDA

The C implementation for Correspondence latent Dirichlet allocation.

Hi-C_handson

Hi-C解析実習の資料。2019-11-15

NGSHandson2017

NMF

The C implementation of Nonnegative Matrix factorization using Itakura-Saito divergence criterion.

ContentRelevanceModel

The C implementation of Content Relevance Model with collapsed gibbs sampling estimation.

CUTRUN_Nextflow

CUT&RUN-seq analysis pipeline built using Nextflow.

EU-NMF

The C implementation of Nonnegative Matrix factorization using Euclidean distance.

flask_mysql_nginx

forNewcomers

Homework for newcomers to my lab.

GAMMA-GLM-C

The C implementation of gamma generalized linear model with MCMC parameter optimization.

GAMMA_GLM

The Python implementation of Gamma generalised linear model with MCMC parameter optimization.

GUniFrac

The Python implementation to compute Generalized UniFrac distance

LDA

The Collapsed gibbs sampling estimation for Latent Dirichlet Allocation.

LDAPrediction

The C implementation for topic prediction of new documents using LDA model learned in advance.

mvsLDA

supervised Latent Dirichlet Allocation for multivariate normal responses.

Python_book

Python_statistics

Python toolkit for multivariate analysis

scanpy_handson

Scanpyを使ったscRNA-seq解析の実習資料。

scanpy_handson_utokyolec2023

verbatim_search_chrome

chrome extension for verbatim google search

vitcomic2

The stand-alone version of VITCOMIC2 (http://vitcomic.org/).