Katie Gostic (she/her)'s repositories
traveller_screening
Code for analyses in 2020 nCoV preprint, based on analyses from Gostic et al., eLife, 2015.
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C4C
Forking the E2M2 repository to edit tutorials for C4C
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covid19-forecast-hub
Projections of COVID-19, in standardized format
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EEB_C119B_C219B
Resources for our course
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epinow2_tests
Test epinow 2
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Midway_scripts
Scripts for testing and setup on the midway cluster
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Reconstructions
Contains code to generate HA imprinting reconstructions
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reconstructions_public
Code to reconstruct influenza A imprinting patterns
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Rt_testing_pipeline
Pipeline to test Rt estimation against synthetic, SEIR data
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