kfatyas / covid-GTA-surge-planning

COVID-19 Healthcare Surge Model for Greater Toronto Area Hospitals

COVID-19 Healthcare Surge Model for Greater Toronto Area Hospitals

Click here to visit the shiny application!

Overview of the repository

Folder	Description
src/	The main source code powering the shiny application.
paper/	Contains the full R code of the model, input data, figures and the main manuscript text.
reports/	Contains the latest PDF versions of our reports to Unity Health Toronto Infection Prevention and Control (IPAC).
data/	Contains an up-to-date timeseries of confirmed COVID-19 cases in the Greater Toronto Area, broken down by region.

Running the shiny application from source

1. Clone the repository and cd into the src directory.
2. Launch the R terminal with R and wait for renv to be installed.
3. Download the necessary packages by running renv::restore(). Warning: this may take a while!
4. Once all the packages are installed, run source('./scripts/run_shiny.R'). This will open a browser window with the shiny application.