kexinhuang12345

stable-diffusion

A latent text-to-image diffusion model

openai-cookbook

Examples and guides for using the OpenAI API

spinningup

An educational resource to help anyone learn deep reinforcement learning.

pytorch-forecasting

Time series forecasting with PyTorch

FinanceToolkit

Transparent and Efficient Financial Analysis

learn2learn

A PyTorch Library for Meta-learning Research

higher

higher is a pytorch library allowing users to obtain higher order gradients over losses spanning training loops rather than individual training steps.

uncertainty-baselines

High-quality implementations of standard and SOTA methods on a variety of tasks.

bioicons

A library of free open source icons for science illustrations in biology and chemistry

hail

Cloud-native genomic dataframes and batch computing

gget

🧬 gget enables efficient querying of genomic reference databases

symbolic_deep_learning

Code for "Discovering Symbolic Models from Deep Learning with Inductive Biases"

Laplace

Laplace approximations for Deep Learning.

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

graph-neural-pde

Graph Neural PDEs

DataShapley

Data Shapley: Equitable Valuation of Data for Machine Learning

ABC-Enhancer-Gene-Prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

relbench

RelBench: Relational Deep Learning Benchmark

FS-Mol

FS-Mol is A Few-Shot Learning Dataset of Molecules, containing molecular compounds with measurements of activity against a variety of protein targets. The dataset is presented with a model evaluation benchmark which aims to drive few-shot learning research in the domain of molecules and graph-structured data.

GSAT

[ICML 2022] Graph Stochastic Attention (GSAT) for interpretable and generalizable graph learning.

genomics-research

DIALOGUE

DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.

chatGPT-for-genetics

Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.

SCAVENGE

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

WholeCellEcoliRelease

Release of the whole cell E. coli model.

latex-cv

A simple and modern template for your [academic] CV

ukbb_parser

A Python module for loading phenotypic and genetic data from the UK Biobank.

ukbpheno

MultiOme

Network-based project to explore gene connectivity through biological scales

gridnet