kevinpryan

BHIT

Bayesian High-order Interaction Toolkit (BHIT) used a novel Bayesian computational method with a Markov Chain Monte Carlo (MCMC) search for detecting epistatic interactions among single nucleotide polymorphisms (SNPs).

bioinformatics-pipeline-tutorial

A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.

caf-subtype-analysis

CAF_Fusion_Neoantigens

git-for-science

A quick introduction to version control with Git and GitHub

hlamajority

kevinpryan

Config files for my GitHub profile.

misc

Some miscellaneous scripts

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

NeoFuse

NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.

Project

Master's project - identification of trans-eQTL clusters resulting from changes in transcription factor binding site preference.

NeoSplice

nextNEOpi

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

nf-co.re

Code and files for the main nf-core website.

pages_test

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rtp_workshop

foobar

thesis

Assignment 6 for MA5114

thesis-test

thesis_ma5111