Kevin Ryan's repositories
BHIT
Bayesian High-order Interaction Toolkit (BHIT) used a novel Bayesian computational method with a Markov Chain Monte Carlo (MCMC) search for detecting epistatic interactions among single nucleotide polymorphisms (SNPs).
bioinformatics-pipeline-tutorial
A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.
genome-seek
Clinical Whole Genome and Exome Sequencing Pipeline
git-for-science
A quick introduction to version control with Git and GitHub
kevinpryan
Config files for my GitHub profile.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
NeoFuse
NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
nextNEOpi
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
nf-co.re
Code and files for the main nf-core website.
rnafusion
RNA-seq analysis pipeline for detection gene-fusions
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
rtp_workshop
foobar
test-datasets
test datasets for hlatyping