ketencimert / protein-binding

Machine Learning for Functional Genomics - Final Project

Data is available at:

https://drive.google.com/drive/folders/1_2WmaUKLWY2q7kN4TLkreHFvZBoZv8dS

Train the model on ChIP-Seq dataset:

python main.py --num_motifs 1 --kernel_size 20 --epochs 400 --device [your device] --dataname chip --datadir [your datadir]

Train the model on ATAC-Seq dataset:

python main.py --num_motifs 160 --kernel_size 20 --epochs 400 --device [your device] --dataname atac --datadir [your datadir]