kentwait

loadlog

Log system-wide CPU temp and load, fan speed, and memory usage. Uses istats and psutil.

alignmentrs

Quickly read and manipulate multiple sequence alignments in Python

conspos

Computes the consensus alignment between global, local and sub-global multiple sequence alignments

docker-stacks

Ready-to-run Docker images containing Jupyter applications

docker-jupyter-cuda

Makefile to rebuild jupyter/*-notebook images using nvidia/cuda as the base container

jupyterhub-dockerspawner-cuda

JupyterHub using individual single-user containers with CUDA capability

alignsim

Fast forward simulation to generate multiple sequence alignment data

alnjoin

Join two alignments based on a common sequence

alnrs

High performance biological sequence alignment and annotation library

biodatatypes

Biological sequence datatypes

biography

A logger for normal people

blockrs

Encode and decode alignment block data

ccsim

Cell competition simulator

cigar2aln

Converts CIGAR string of tartget and query sequences into a pairwise alignment

cuda-mamba

Nvidia CUDA base container with Mamba installed

datascience_notebook_web3py

Jupyter datascience notebook + web3.py container

dnds

Counting methods for computing dN/dS between two sequences

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

etherscan-rs

Etherscan JSON-RPC wrapper in Rust

gofasta

Go package for reading and writing FASTA files

htsops

Analyze SAM/BAM and tabix-indexed data in Python

ir_sensor_server

REST API for IR blaster and sensors connected to the Raspberry PI

lirc_ircodec

mlbot_tutorial

A tutorial for algorithmic trading bot using machine learning.

notebook

Jupyter Interactive Notebook

odds

Convert between odds formats and probabilities

picklenote

Pickle an object together with a short note about it

pytumopp

Python interface for tumopp

seequence

Sequence annotation and manipulation in Python

tsukuru

Command-line tool for working with Jupyter notebooks