Ken-ichi Chiba's repositories
mutation_util
check GenomonPipeline result file
Language:PythonGPL-3.0000
GenomonHotspotCall
identify hotspot mutations
Language:PythonGPL-3.0000
Language:PythonMIT000
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Language:RNOASSERTION000
EBFilter
empirical bayesian mutation filtering
Language:PythonGPL-3.0000
GenomonSV
structure detection program
Language:PythonGPL-3.0000
Language:PythonGPL-3.0000
GenomonFisher
Genomon fisher exact test mutation caller
Language:PythonGPL-3.0000
onebreak
national cancer center break point
Language:Python000
Language:PythonGPL-3.0000
Language:PythonMIT000
TraficLiftoverGRCh37toGRCh38
Lift over the Trafic result file from GRch37 to GRCh38.
Language:PythonMIT000
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sv_merge
Merge SV results detected by multiple tools
MIT000
Language:PythonMIT000
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annot_gnomad
Annotate structural variants in gnomAD
Language:PythonMIT000
GenomonExpression
python script for calculating expression values from RNA-seq
GPL-3.0000
nanopolish
Signal-level algorithms for MinION data
Language:C++MIT000
Genomon-ITDetector
for detecting internal tandem duplication from genome sequence data.
SvABAvsGenomonSV
The comparison of SvABA and GenomonSV
sv_utils
package for analyzing GenomonSV results
Language:PythonGPL-3.0000
RefGeneTxtToBed
Convert UCSC refGene.txt to bed format
Language:Common Workflow LanguageMIT000
Language:Dockerfile000
Language:ShellGPL-3.0000
three-arrowed-vcf-validator
Python tools for validating vcf file
incubator-specification
Ideas on VCF specification
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