Ken-ichi Chiba's repositories
Genomon-ITDetector
for detecting internal tandem duplication from genome sequence data.
RefGeneTxtToBed
Convert UCSC refGene.txt to bed format
SvABAvsGenomonSV
The comparison of SvABA and GenomonSV
three-arrowed-vcf-validator
Python tools for validating vcf file
annot_gnomad
Annotate structural variants in gnomAD
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EBFilter
empirical bayesian mutation filtering
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GenomonExpression
python script for calculating expression values from RNA-seq
GPL-3.0000
GenomonFisher
Genomon fisher exact test mutation caller
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GenomonHotspotCall
identify hotspot mutations
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GenomonSV
structure detection program
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incubator-specification
Ideas on VCF specification
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mutation_util
check GenomonPipeline result file
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nanopolish
Signal-level algorithms for MinION data
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onebreak
national cancer center break point
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sv_merge
Merge SV results detected by multiple tools
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sv_utils
package for analyzing GenomonSV results
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TraficLiftoverGRCh37toGRCh38
Lift over the Trafic result file from GRch37 to GRCh38.
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