Ken-ichi Chiba's repositories

mutation_util

check GenomonPipeline result file

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GenomonHotspotCall

identify hotspot mutations

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EBFilter

empirical bayesian mutation filtering

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GenomonSV

structure detection program

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GenomonFisher

Genomon fisher exact test mutation caller

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onebreak

national cancer center break point

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TraficLiftoverGRCh37toGRCh38

Lift over the Trafic result file from GRch37 to GRCh38.

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sv_merge

Merge SV results detected by multiple tools

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annot_gnomad

Annotate structural variants in gnomAD

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GenomonExpression

python script for calculating expression values from RNA-seq

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nanopolish

Signal-level algorithms for MinION data

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Genomon-ITDetector

for detecting internal tandem duplication from genome sequence data.

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SvABAvsGenomonSV

The comparison of SvABA and GenomonSV

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sv_utils

package for analyzing GenomonSV results

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RefGeneTxtToBed

Convert UCSC refGene.txt to bed format

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three-arrowed-vcf-validator

Python tools for validating vcf file

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incubator-specification

Ideas on VCF specification

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