keiyamamo

jax-fem

Differentiable Finite Element Method with JAX

ClipVessel

3D Slicer extension for clipping or truncating 3D arteries

Simula

Codes created in the context of my master internship at Simula

inverse_identification_soft_tissue

paper-tips-and-tricks

Best practice and tips & tricks to write scientific papers in LaTeX, with figures generated in Python or Matlab.

neko

/ᐠ. ｡.ᐟ\ᵐᵉᵒʷˎˊ˗

comet-fenicsx

COmputational MEchanics numerical Tours with FEniCSx

pr-agent

🚀CodiumAI PR-Agent: An AI-Powered 🤖 Tool for Automated Pull Request Analysis, Feedback, Suggestions and More! 💻🔍

VaSP

A collection of tools for pre-processing, simulating, and post-processing vascular fluid-structure-interaction problems

conda

A system-level, binary package and environment manager running on all major operating systems and platforms.

numpy

The fundamental package for scientific computing with Python.

rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

spod_matlab

Spectral proper orthogonal decomposition in Matlab

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

dolfin_pyvista_adapter

Adapter for Pyvista for arbitrary order (discontinuous) Lagrange with Legacy Dolfin.

fenics-feedstock

A conda-smithy repository for fenics.

FreeCAD

This is the official source code of FreeCAD, a free and opensource multiplatform 3D parametric modeler.

h5py

HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.

ConfigArgParse

A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables.

chondrocyte

Model of the fundamental electrophysiological characteristics of human articular chondrocytes, focused on K+ transport mechanisms, and their ability to regulate to the resting membrane potential, Em.

numba

NumPy aware dynamic Python compiler using LLVM

efflux

A GPU particle demo with fluid motion simulated through curl noise.

METIS

METIS - Serial Graph Partitioning and Fill-reducing Matrix Ordering

mamba

The Fast Cross-Platform Package Manager

turtlefsi-feedstock

A conda-smithy repository for turtlefsi.

openpiv-python

OpenPIV is an open source Particle Image Velocimetry analysis software written in Python and Cython

meshio

:spider_web: input/output for many mesh formats

OasisMove

A verified and validated Python/FEniCS-based CFD solver for moving domains

VaMPy

A collection of tools for pre-processing, simulating, and post-processing vascular morphologies.