Kirk Gosik (kdgosik)

kdgosik

Geek Repo

Company:Broad Institute

Home Page:http://kdgosik.netlify.com

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Organizations
open-science-org

Kirk Gosik's repositories

MarkdownIntakeProcess

Shiny Application for Project Intake that knits markdown files in a notebook fashion. This will have the ability to input project name and description. It also has spots for outcomes and measures associated with the project. While entering the application knits and renders a Markdown file for reproducible and tracking of the tasks. It also includes an ace editor for the analyst to incorporate R code to make visuals. Along with the editor a spreadsheet style table will be included for the users to enter track outside data sources when necessary.

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WDL_Tasks

GraphQL server for WDL Tasks

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scRipt

Single Cell R interactive playground tool

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apps

Repository For All Web App scripts and Dockerfiles

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covid19explore

Exploring the COVID-19 Kaggle Challenge dataset.

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CrohnsExplore

Exploring Crohn's Disease abstracts from pubmed

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Defense

Bookdown writeup of my dissertation defense

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DefensePresentation

R presentation format for my defense

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DoingBayesianDataAnalysis

Code for following along with the books Doing Bayesian Data Analysis by Kruschke and Bayesian Data Analysis by Gelman et al

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frontend-nanodegree-resume

This repository is used for one of the projects in Udacity's Front-End Web Developer Nanodegree program. Learn how to become a Front-End Developer today with line-by-line code reviewed projects and get a job with career services!

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glmm-de-genes

Differential expression testing of dependent data

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go-web-development

Following along with Todd McLeod's course on YouTube (https://www.youtube.com/watch?v=mYub8-alEdI&list=PLSak_q1UXfPpXj-q1BeucvBAlNdotQWVD) for Golang Web Programming - Fall 2016

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iForm

R package for the iForm procedure

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iFormFunctionalMapping

Project for developing iForm for functional mapping

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jupyter-ipfs-extension

jupyter nbextension to interact with IPFS using JSIPFS API

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kubernetes-course

Kubernetes Course Files

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learn-rustlang

This will be used to track progress for learning the Rust programming language

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MarkdownTemplates

Repository for markdown templates. These will be used to create markdown reports in modular fashion.

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merkledag-gendb

Using a merkle DAG structure to track genetic engineering constructs and changes

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merkledag-workflow

MerkleDAG-workflow

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my_website_source

Source material for my website

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Neural_Differential_Equations

This is the code for "Neural DIfferential Equations" By Siraj Raval on Youtube

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NotebookToSite

R package to make an RMarkdown file Notebook and turn into a static website

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old-website

Static Website

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project-template

project template repository

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SecondaryAnalysisCellRanger

Shiny app for that follows the vignette for the cellrangerRkit PBMC secondary analysis using R

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src

scripts source repository

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StockScreeningStrategies

An R package for a collection of stock screening strategies

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UdemyTraining

Udemy Training for Golang

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