kchennen's repositories
Secondary-Structure-Prediction
Implementation of Chou and Fasman algorithm for prediction of alpha helix and beta strand secondary structures in protein sequences and compare with output from STRIDE webserver.
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
APPRAISE
A Bayesian framework for the analysis and interpretation of rare genetic variants
Benchmarking_splice_prediction_tools
Analysis scripts used for the manuscript Benchmarking deep learning splice prediction tools using functional splice assays
bio-datasets
Free collection of Bio datasets and embeddings
biograkn-covid
BioGrakn - COVID Knowledge Graph
biowordlists
Biomedical wordlists (of drugs, genes, etc) for several text mining projects
cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
cnvkit
Copy number variant detection from targeted DNA sequencing
CogStack-SemEHR
Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
feature-viewer-typescript
Library to visualize protein sequence features in Typescript using D3. This repository is based on calipho-sib/feature-viewer.
Flame
Flame: A web tool for functional enrichment analysis using multiple gene lists
GSEApy
Gene Set Enrichment Analysis in Python
igv.js-flask
Example project for integrating igv.js and flask
MachineMots
Code de ma vidéo https://www.youtube.com/watch?v=YsR7r2378j0
matplotlib_for_papers
Handout for the tutorial "Creating publication-quality figures with matplotlib"
MCMC
Code used in the video https://www.youtube.com/watch?v=z4tkHuWZbRA
mofapy2
Multi-omics factor analysis v2
PhenCards
Development of phencards.org web server for one stop shop of phenotype information
protein_complex_maps
Kdrew's scripts for handling protein complex map data
renovo
Clinical machine-learning based interpreter of germline mutations.
sanity
The Sanity Studio – Collaborate in real-time on structured content
sparql-playground
A standalone multi-platform web application to learn SPARQL
statannot
add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot
VICTOR
VICTOR: A visual analytics web application for clustering comparison
Web-Dev-For-Beginners
24 Lessons, 12 Weeks, Get Started as a Web Developer
WSBIM1207
Introduction to bioinformatics and data science