kblin / gc_split

Split sequences based on their GC content

gc_split

A simple script to split DNA sequence records into two sets of records with a high GC content and a low GC content, respectively.

Installation

Assuming you have BioPython installed in your environment, the script should just work. If you prefer to run it with Python 2.x instead of Python 3, change the first line of the script from

#!/usr/bin/env python3

to

#!/usr/bin/env python2

(or whatever the python2 binary is called on your system).

Running

Simply call the script with an input file to get going. --help will provide all command line options.

License

This code is licensed under the BSD 3-clause license. Find the exact term in the LICENSE file.