Giters
kbaseattic
/
assembly
An extensible framework for genome assembly.
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Stargazers:
12
Watchers:
9
Issues:
224
Forks:
14
kbaseattic/assembly Issues
Compute Node: If min_free_space cannot be met via GC, node hangs
Updated
8 years ago
KBase image
Updated
9 years ago
check if we need to add the facheck step for the reapr plugin
Updated
9 years ago
ImportError: No module named packages.urllib3.poolmanager
Updated
9 years ago
Comments count
1
add validation on input read length for assemblies involving IDBA
Updated
9 years ago
fix incoherency about running jobs in various pieces
Updated
9 years ago
Comments count
2
Fix plugin to deal with SPAdes core dumps
Updated
9 years ago
Comments count
1
velvet in auto recipe does not recognize FASTA files
Closed
9 years ago
Comments count
4
mongodb sort error
Closed
9 years ago
Comments count
5
improve arast_score
Updated
10 years ago
add a module for joining overlapping reads
Updated
10 years ago
Comments count
3
support caching for previously computed datasets
Updated
10 years ago
Comments count
1
update ar-filter to remove Phi X contig
Updated
10 years ago
capture basic performance data from jobs
Updated
10 years ago
Comments count
6
integrate spate plugin
Closed
10 years ago
Comments count
1
fix velvet bug in parsing mixed interleaved/separate libraries
Closed
10 years ago
Comments count
1
ar-stat -n option not documented
Closed
10 years ago
Comments count
3
Handle multiple PE libs in IDBA plugin
Closed
9 years ago
Comments count
5
create local VIP user list
Closed
10 years ago
Comments count
1
handle user limit reached message better
Closed
10 years ago
Comments count
1
ar-kill bug
Closed
10 years ago
Comments count
3
job list lock bug
Closed
10 years ago
Comments count
4
add upgrade option to install-dependencies
Closed
10 years ago
Comments count
1
make compute server talk to rabbitmq indirectly through router
Updated
9 years ago
Comments count
1
enable fastq entry for HGAP
Updated
10 years ago
implement plugin for SOAPdenovo
Updated
10 years ago
implement plugin for ECTools
Updated
10 years ago
set up dummy server for maintenance message
Closed
10 years ago
Comments count
1
get conversation started on getting a solid compute server
Closed
10 years ago
Comments count
1
resolve queueing issue
Closed
10 years ago
resume nightly testing
Closed
10 years ago
Comments count
5
get service management script to work again
Closed
10 years ago
Comments count
1
get service monitor page back up
Updated
10 years ago
implement MEGAHIT
Closed
10 years ago
Comments count
7
Support hybrid assemblies
Updated
10 years ago
Ability to save pipelines/protocols for reuse
Updated
10 years ago
fix bug in handling multiple --single_url files
Closed
10 years ago
Comments count
3
reapr plugin should support smalt threads
Updated
10 years ago
point production URL to new control server IP
Closed
10 years ago
stand up minimal service in havana
Closed
10 years ago
Save/Upload module log files if available
Updated
10 years ago
implement a plugin for Pilon
Updated
10 years ago
create an ARAST support email address
Updated
10 years ago
Comments count
1
create a mailing list
Updated
10 years ago
find a reference-based assembler and implement it
Updated
10 years ago
Comments count
2
Connect Assembly Service to KBase logging
Updated
10 years ago
Comments count
1
Quast parser
Updated
10 years ago
update spades to v3.5.0
Closed
10 years ago
Comments count
1
test wheel based release
Closed
10 years ago
Comments count
3
Some jobs get stuck in job tracker list
Closed
10 years ago
Comments count
2
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