kathyxchen's repositories
kathyxchen.github.io
site re-design for EALC
crosstalk-correction
Python implementation of Donato et al. (2013)'s maximum impact estimation. A pre-processing step to pathway analysis.
data-vis-js
those d3.js attempts (just for fun)
mlss-genomics-tutorial
Bumblekite MLSS genomics tutorial Aug 2022
pm-tool-tmp
cis350 project
bioconda-recipes
Conda recipes for the bioconda channel.
cos534-final-project
COS534 Final Project code
day-4-exercises
PDC Day 4, work with VIM, PHP, and SQL
fileparsing
information extraction from folders of csvs
frogfinder
intro to drupal, PDC assignment
gregslist
intro to drupal, PDC assignment, exercise in content management--emulates basic framework of craigslist
html-scraping-exercise
for personal use; python script which extracts ratings from HTML pages and averages them
marketBias
data and source code for "Addressing Marketing Bias in Product Recommendations" WSDM'20
Mentorship
2 basic browser extensions (submit extension unfinished)
openerp-mods-xmlrpcs
module frameworks and xmlrpc templates created for easy modification and usage
PathCORE-analysis
This repository is in support of the PathCORE paper. It contains all the code and necessary data/metadata to repeat all analyses in the paper.
PathCORE-dev
Methods to build a network of pathway co-occurrence relationships out of expression signatures extracted from transcriptomic compendia.
PathCORE-T-demo
The demo application for the PathCORE paper
PCC-RL
Reinforcement learning resources for PCC.
ppin-pipeline
in-progress work on a data-driven pathway analysis
prelim-website
PDC Day 5, blog with LAMP stack
rails-practice
PDC ruby on rails week
scikit-learn
scikit-learn: machine learning in Python