Kath Sherratt's repositories
covid-delays
exploring delay distributions in covid patient linelist
r-for-research
Materials developed for a workshop at LSHTM introducing good practices using R for research
covid-data-comparison
Compare sources of Covid-19 data
covid-regional
This a submodule of epiforecasts/covid - see that repo for further information.
covid19-forecast-hub
Projections of COVID-19, in standardized format
covid19-forecast-hub-europe
European Covid-19 Forecast Hub. Under development.
covid19-scenario-modeling-hub
COVID-19 Scenario Modeling Hub
covidData
Versioned covid data
covidHubUtils
Utility functions for the COVID-19 forecast hub
covidregionaldata
Data extraction tools for the Covid-19 outbreak
ecdc-weekly-growth-forecasts
COVID-19 cases forecasts for the ECDC Forecast Hub
EpiNow
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
epinowcast
Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.
example-complex-scenario-hub
An example scenario modeling hub
forecast.vocs
Contains models and tools to produce short-term forecasts for both case and sequence notifications assuming circulation of either one or two variants. Tools are also provided to allow the evaluation of the use of sequence data for short-term forecasts in both real-world settings and in user generated scenarios.
NCoVUtils
Utility functions for the 2019-NCoV outbreak
SoftwareChatter
Software engineering discussion group resources
streamlit-example
Example Streamlit app that you can fork to test out share.streamlit.io
trust
An interactive guide to the game theory of cooperation
uk-public-covid-data
Collating sources of public data related to Covid-19 for England and the UK