These are the scripts specific to the Deane 2020 Journal of Physiology publication:
Title: Ketamine anesthesia induces gain enhancement via recurrent excitation in granular input layers of the auditory cortex
Authors: Katrina E. Deane, Michael G. K. Brunk, Andrew W. Curran, Marina M. Zempeltzi, Jing Ma, Xiao Lin, Francesca Abela, Sümeyra Aksit, Matthias Deliano, Frank W. Ohl, Max F. K. Happel
https://physoc.onlinelibrary.wiley.com/doi/10.1113/JP279705
Please cite us if you use these scripts
Raw data for this project can be found at: https://figshare.com/articles/Raw_Data_for_Deane_et_al_2020_JPhys/12083154 (1.8 GB)
Animal raw data (e.g "GKD_02_0028.mat") should be placed in ../Deane2020_JPhys/Raw;
Processed data for this project can be found at: https://cloud.lin-magdeburg.de/s/dBGczo86o9o3MK3 (12 GB, very slow download, sorry)
Group Data (e.g. "AnesthetizedPre_Data.mat") should be placed in ../Deane2020_JPhys/Data;
Sorted Group Data (e.g. "AnesthetizedPre_Data.m_Threshold_0.25_Zscore_0_binned_1_mirror_0.mat") should be placed in ../Deane2020_JPhys/Data/Output;
Spectral Data (e.g. "scalograms.mat") should be placed in ../Deane2020_JPhys/Data/Spectral;
If animal raw data files are placed correctly in ../Deane2020_JPhys/Raw, running the Pipeline_Deane2020 script will produce all figures and statistics from the publication. Further data steps are provided to allow a user to start from different points. It's my recommendation to run this script in sections but it isn't necessary.
Please raise an issue in this repository if something is not running. Thank you!
A clone has been created in the CortXplorer Organization