ggsave() does not include the annotated texts
tdlan80 opened this issue · comments
I have produced several plots using ggpubr and then used ggarrange to make a grid of each subplot. Then, I added additional texts to the gird with annotate_figure. All these steps worked with no issue
plot_allClassDEP <- plot_allClassDEP %>% annotate_figure(top = text_grob(label = "NDVI-based index, DEP classes, smooth5", color = "black", face = "bold", size = 10, just ="center" ), bottom = text_grob(label = "pairwise comparisons: Wilcoxon test, p.adjust = Bonferroni", color = "black", face = "plain", size = 10, just = "right" ), left = NULL, right = NULL, fig.lab = "Fig #", fig.lab.pos = c("top.left"), fig.lab.size = 10, fig.lab.face = "plain")
Finally, I saved this output with ggsave.
ggsave2(plot_allClassDEP, filename = "figsTabs/plot_allClassDEP.png", device = "png", dpi = 300, limitsize = F,
width = 14, height = 11)
The figure saved does not include the texts I annotated.
I also tried ggsave2 and save_plot.
save_plot(filename = "figsTabs/plot_allClassDEP.png", plot = plot_allClassDEP, ncol = 4, nrow = 2,
base_height = 3.71, base_asp = 1.618, base_width = NULL,
device = "png", dpi = 300, limitsize = F)
Still, my saved image of the grid does not include the annotations. When I look at the figure through the plots window of Rstudio, I can see the annotations. But, this is dropped when I save it.
However, if i change the device arg in ggsave to pdf, I get to save the annotation as well. PNG for instance, does not work as it omits the annotations
session_info()
R version 4.2.3 (2023-03-15 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19044)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C LC_TIME=English_United States.utf8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] cowplot_1.1.1 ggtext_0.1.2 stringi_1.7.12 glue_1.6.2 ggpubr_0.6.0 rstatix_0.7.2
[7] gridExtra_2.3 ggrepel_0.9.3 MASS_7.3-58.3 writexl_1.4.2 fs_1.6.1 statsExpressions_1.5.0
[13] ggstatsplot_0.11.1 jmuOutlier_2.2 emmeans_1.8.5 rcompanion_2.4.26 XNomial_1.0.4 coin_1.4-2
[19] survival_3.5-5 hablar_0.3.2 magrittr_2.0.3 janitor_2.2.0 lubridate_1.9.2 forcats_1.0.0
[25] stringr_1.5.0 dplyr_1.1.1 purrr_1.0.1 tidyr_1.3.0 tibble_3.2.1 ggplot2_3.4.2
[31] tidyverse_2.0.0 readr_2.1.4 readxl_1.4.2
#
devtools::session_info()setting value
version R version 4.2.3 (2023-03-15 ucrt)
os Windows 10 x64 (build 19044)
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United States.utf8
ctype English_United States.utf8
tz America/New_York
date 2023-04-16
rstudio 2023.03.0+386 Cherry Blossom (desktop)
pandoc NA
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I was having what seemed like the same issue. I was trying to save a tiff but even a pdf didn't include the annotations. I'm not sure why, but it seems like ggsave is pulling the ggplot object and annotate_figure only modified the figure display, not the ggplot object itself. I found a workaround by running annotate_figure in a pipe in the "plot" argument of ggsave. So:
ggsave("yourPlot.png", plot = yourPlot %>% annotate_figure(yourPlot, arguments you want), limitsize = F,
width = 14, height = 11)