Karl Nordström's repositories
gNOMePeaks
Peak calling in whole-ganome NOMe data
atac-seq-pipeline
ENCODE ATAC-seq pipeline
bibigrid
BiBiGrid is a tool for an easy cluster setup inside a cloud environment.
bioconda-recipes
Conda recipes for the bioconda channel.
Bis-tools
A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )
bs_call
DNA methylation and variant Caller for Bisulfite Sequencing Data.
ComplexHeatmap
Make Complex Heatmaps
conda
OS-agnostic, system-level binary package manager and ecosystem
gem3-mapper
GEM-Mapper v3
gemBS
gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).
grape-nf
An automated RNA-seq pipeline using Nextflow
moabs
A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data
multi-package-containers
Testing building mulled containers for multi-requirement tools.
openjdk-feedstock
A conda-smithy repository for openjdk.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
wgbs-pipeline
An infrastructure to run gemBS pipeline https://github.com/heathsc/gemBS