Kâmuran İmran's repositories
elma
🇹🇷 🍎 TR keybindings for macOS
graphein
Protein Graph Library
phosphosite
Predicting phosphorylation sites on proteins.
BINF2010
Tutoring resources for BINF2010.
biopython
Official git repository for Biopython (originally converted from CVS)
dash-bio
Open-source bioinformatics components for Dash
ddamsproteomics
A Nextflow MS DDA proteomics pipeline
deterministic-malaria-model
Deterministic malaria model using odin
epiTCR
epiTCR: a highly sensitive predictor for TCR–peptide binding
gkeepapi
An unofficial client for the Google Keep API.
kash
Shell aliases
kinome
Kinase proteome library.
loco_hd
The LoCoHD metric for protein-protein structure comparison
mhctools
Python interface to running command-line and web-based MHC binding predictors
NeuralPLexer
NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
nn-zero-to-hero
Neural Networks: Zero to Hero
phospholite
Lightweight and minimal installation of phosphosite project which uses pre-generated graphs and labels for reproducible analysis on NCI.
rmsd
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
TCRdock
python tools for TCR:peptide-MHC modeling and analysis
tcren-ms
📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
textual
The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.
tldr
📚 Collaborative cheatsheets for console commands
tmtools
Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.
USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins