Kami Chiotti's repositories
CompleteTCR
Repertoire determination from RNAseq of paired TCR chains
express
Docker for eXpress https://pachterlab.github.io/eXpress v1.5.1
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Fuzzy_CoCA
Conversion of Pavana Anur's fuzzy cluster-of-clusters algorithm to pipeline
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gatk4-somatic-snvs-indels
Workflows for somatic short variant discovery with GATK4
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knife-machete-spachete
RNAseq Fusion Detection Pipeline
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SPACHETE
MACHETE SPORK fusion
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vcf2maf-tools
Suite of tools from https://github.com/mskcc/vcf2maf/
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