Beast code in Giters

Kami Chiotti's repositories

CompleteTCR

Repertoire determination from RNAseq of paired TCR chains

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express

Docker for eXpress https://pachterlab.github.io/eXpress v1.5.1

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fpfilter-tool

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Fuzzy_CoCA

Conversion of Pavana Anur's fuzzy cluster-of-clusters algorithm to pipeline

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gatk-cocleaning-tool

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gatk4-somatic-snvs-indels

Workflows for somatic short variant discovery with GATK4

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mc3

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tcgavcf-tool

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vcf-tools

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indelocator-tool

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knife-machete-spachete

RNAseq Fusion Detection Pipeline

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muse-tool

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mutect-tool

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pancan-maf-merge

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picard-tool

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pindel-tool

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samtools-tool

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somaticsniper-tool

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SPACHETE

MACHETE SPORK fusion

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varscan-tool

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vcf2maf-tools

Suite of tools from https://github.com/mskcc/vcf2maf/

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