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SPAdes Genome Assembler

Language:C++NOASSERTION719 32 1113

Pilon is an automated genome assembly improvement and variant detection tool

Language:ScalaGPL-2.0337 30 169

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

Language:C++GPL-3.0192 12 70

Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach

Language:Python35 40

Combining de novo and reference-guided assembly with Scaffold_builder

Language:PythonGPL-3.019 2 1

@ Hamamatsu University School of Medicine in 16-17, Jan. 2018

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Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Language:GroovyMIT100