kad-ecoli

Chengxin Zhang's repositories

mmCIF2BioLiP

BioLiP2 database curation and web interface

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BeEM

Conversion of PDBx/mmCIF files to best effort/minimal PDB files

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python_scripts

scripts for parsing PDB, fasta, and GO

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TMalign

This repo is outdated. Please use https://github.com/pylelab/USalign instead

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hhsuite2

A fork for the old hhsuite-2.0.16

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pdc

Protein data compressor

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baseline

CAFA baseline methods

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CE

Combinatorial Extension (CE)

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MSAParser

utilties for parsing FASTA and PSICOV format multiple sequence alignment

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PDBParser

c++ programs for parsing PDB files

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rMSA2

RNA Multiple Sequence Alignment

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CAFAbeyond

Evaluating the feasibility of extending CAFA to larger dataset

Language:OpenEdge ABL1 3 1

furna

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minimolprobity

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obo2csv

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rateratio_test

Python implement of rateratio.test R package

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blastKNN_benchmark

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blastKNN_benchmark_cafa3

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contactlib

Tool for searching proteins through structural fingerprints.

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docker-lamp-cgi

A simple LAMP image using Ubuntu, Apache, PHP and MySql in a single image with CGI support

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dssp

The DSSP building software

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GoFDR

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HomodimerDB

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MRTModSeq

Modification profiling with Marathon RT

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PeptideBuilder

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psipred

PSIPRED Protein Secondary Structure Predictor

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qdiamond

Accelerated BLAST compatible local sequence aligner.

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rna3db

maintain local copy of RNA structure database

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RREntropyScore

Python project: calculating entropy-based score for residue-residue contact predictions in CASP.

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uniprot_figure

ploting trembl vs swissprot vs pdb

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