k3yavi

vpolo

To remember what have been lost !

project-euler

Frequently Used:- Cheastsheet

Awesome-Bioinformatics-Benchmarks

A curated list of bioinformatics bench-marking papers and resources.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

signac-kit

Fast wrapper around signac atac-seq processing workflow.

bioc-proposal

bioconda-recipes

Conda recipes for the bioconda channel.

eds

Reader for Alevin's EDS format

fishpond

Fishpond: differential transcript and gene expression with inferential replicates

k3yavi

k3yavi.github.io

Avi's Personal Page Using: SinglePaged - Simple Jekyll template

paper-review

Review's of the paper I read. All views are my own, no claim of righteousness.

pufferfish

An efficient index for the colored, compacted, de Bruijn graph

rcppcnpy

Rcpp bindings for NumPy files

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-debruijn

De Bruijn graphs in Rust

rust-pseudoaligner

Single-Cell RNA-seq pseudo-aligner

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

seurat

R toolkit for single cell genomics

seurat-wrappers

Community-provided extensions to Seurat

shrek

what shrek do

signac

R toolkit for the analysis of single-cell chromatin data

sprs

sparse linear algebra library for rust

STAR

RNA-seq aligner

tabula-muris-vignettes

Examples analyses using the single-cell RNA-seq data from mouse cell atlases

thesis

thesis for RPE and defense @ Stony Brook

TraIN

TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

uwot

An R package implementing the UMAP dimensionality reduction method.

walle