To guide the visitors having a better sense about the project, here we briefly introduce the specific purposes of the directories. The layout of directories is based on the idea from ProjectTemplate.
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cache: Here we store intermediate data sets that are generated during preprocessing steps.
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data: Here we store our raw data of small size. Data of large size, i.e. > 100M, store in a
largedatafolder that has been ignored using.gitignore. -
doc: Documentation codes (i.e. Rmd files) for generating the figures.
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graphs: Graphs produced during the analysis.
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lib: Some functions used within this project.
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munge: Here we store some preprocessing or data munging codes.
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profilling: Main scripts for the project. It contains some sub-directories.
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TODO.md: A todo list.